Univ.-Prof. Prof. h.c. (Amity University, India) Dr.-Ing.
Dorit Merhof
103
+49 241 80 27860
Dorit.Merhof@lfb.rwth-aachen.de
Dorit Merhof
103
+49 241 80 27860
Dorit.Merhof@lfb.rwth-aachen.de
Curriculum Vitae
| Jul 2013 – Sep 2022 |
Professor (W3), Institute of Imaging & Computer Vision – Lehrstuhl für Bildverarbeitung, RWTH Aachen University, Germany |
| Oct 2009 – Jun 2013 | Assistant Professor (W1) for Visual Computing, University of Konstanz, Germany |
| Jan 2008 – Sep 2009 | Research Scientist, Siemens Molecular Imaging, Oxford, UK |
| Oct 2007 | Doctorate in Medical Image Analysis and Visualization Thesis: “Reconstruction and Visualization of Neuronal Pathways from Diffusion Tensor Data“ |
| Oct 2003 – Dec 2007 | PhD student, Computer Graphics Group, University of Erlangen-Nuremberg, Germany |
| Oct 1998 – Sep 2003 | Undergraduate and graduate studies (Computer Science), University of Erlangen-Nuremberg, Germany |
Functions
- Member of the Scientific Advisory Committee of the Heidelberg Image Processing Forum (2018)
- Speaker of the GI Fachgruppe “Visual Computing in Biology and Medicine” (2012-2014, 2015-2017)
- Organizer of the Karl-Heinz-Höhne Award 2016, 2014, 2012
- Jury Member for the Friedrich-Wilhelm-Award, RWTH Aachen University (208, 2017, 2016, 2015, 2014)
- Member of the Exploratory Research Space (ERS) Selection Committee, RWTH Aachen University (2018, 2017)
- Member of the Gesellschaft für Informatik e.V. (GI) (2012-2017)
- Member of the CURAC – Deutsche Gesellschaft für Computer- und Roboterassistierte Chirurgie (2012-2017)
Member of the CURAC advisory board (CURAC-Beirat)
Member of the CURAC executive committee (CURAC-Präsidium)
- Member of the German BioImaging Network, Workgroup 6
- Organizer Workshop “Diffusion Imaging”, 2015 (University Hospital Marburg), 2014 (LfB Aachen), 2013 (INI Hannover), 2012 (GI Informatik)
- Program Committee, Bildverarbeitung für die Medizin (BVM) 2018, 2017, 2016, 2015, 2014, 2010
- International Program Committee, International Workshop on Vision, Modeling and Visualization (VMV) 2016, 2015, 2014, 2013, 2012
- International Program Committee, MICCAI Workshop on Computational Diffusion MRI (CDMRI) 2018, 2017, 2016, 2015, 2014, 2013
- International Program Committee, IEEE Symposium on Biological Data Visualization (IEEE BioVis) 2014, 2013, 2012
- International Program Committee, Eurographics (EG) Conference on Visualization (EuroVis) 2017, 2015, 2014, 2013
- International Program Committee, Eurographics (EG) Workshop on Visual Computing for Biology and Medicine (VCBM) 2018, 2017, 2016, 2015, 2014, 2012, 2010
Publications
Books and Book Chapters
2012
![](https://www.lfb.rwth-aachen.de/wp-content/themes/bootstrap-basic4/img/file-bibtex_icon.png")
Elisabeth Stühler and Dorit Merhof
Principal Component Analysis Applied to SPECT and PET Data of Dementia Patients – A Review
In: Principal Component Analysis – Multidisciplinary Applications
Principal Component Analysis Applied to SPECT and PET Data of Dementia Patients – A Review
In: Principal Component Analysis – Multidisciplinary Applications
2007
Dorit Merhof
Reconstruction and Visualization of Neuronal Pathways from Diffusion Tensor Data
In: Arbeitsberichte des Departments Informatik (PhD Thesis)
Reconstruction and Visualization of Neuronal Pathways from Diffusion Tensor Data
In: Arbeitsberichte des Departments Informatik (PhD Thesis)
Journal Publications
2023
Sanaz Karimijafarbigloo, Reza Azad, Amirhossein Kazerouni, Yury Velichko, Ulas Bagci and Dorit Merhof
Self-supervised Semantic Segmentation: Consistency over Transformation
In: arXiv preprint arXiv:2309.00143
Self-supervised Semantic Segmentation: Consistency over Transformation
In: arXiv preprint arXiv:2309.00143
2023
Sanaz Karimijafarbigloo, Reza Azad and Dorit Merhof
Self-supervised few-shot learning for semantic segmentation: An annotation-free approach
In: arXiv preprint arXiv:2307.14446
Self-supervised few-shot learning for semantic segmentation: An annotation-free approach
In: arXiv preprint arXiv:2307.14446
2023
Amirhossein Kazerouni, Sanaz Karimijafarbigloo, Reza Azad, Yury Velichko, Ulas Bagci and Dorit Merhof
FuseNet: Self-Supervised Dual-Path Network for Medical Image Segmentation
In: arXiv preprint arXiv:2311.13069
FuseNet: Self-Supervised Dual-Path Network for Medical Image Segmentation
In: arXiv preprint arXiv:2311.13069
2023
Reza Azad, Moein Heidary, Kadir Ylmaz, Michael Hüttemann, Sanaz Karimijafarbigloo, Yuli Wu, Anke Schmeink and Dorit Merhof
Loss functions in the era of semantic segmentation: A survey and outlook
In: arXiv preprint arXiv:2312.05391
Loss functions in the era of semantic segmentation: A survey and outlook
In: arXiv preprint arXiv:2312.05391
2023
Yuli Wu, Laura Koch, Peter Walter and Dorit Merhof
Abstract: Convolutional Neural Network-based Inverse Encoder for Optimization of Retinal Prosthetic Stimulation
In: Artificial Vision – The International Symposium on Visual Prosthetics
Abstract: Convolutional Neural Network-based Inverse Encoder for Optimization of Retinal Prosthetic Stimulation
In: Artificial Vision – The International Symposium on Visual Prosthetics
2022
Reza Azad, Ehsan Khodapanah Aghdam, Amelie Rauland, Yiwei Jia, Atlas Haddadi Avval, Afshin Bozorgpour, Sanaz Karimijafarbigloo, Joseph Paul Cohen, Ehsan Adeli and Dorit Merhof
Medical image segmentation review: The success of u-net
In: arXiv preprint arXiv:2211.14830
Medical image segmentation review: The success of u-net
In: arXiv preprint arXiv:2211.14830
2022
Eva Zentrich, Laura Wassermann, Birgitta Struve, Kristin Selke, Manuela Buettner, Lydia Maria Keubler, Janin Reifenrath, Nina Angrisani, Merle Kempfert, Annika Krause, Olaf Bellmann, Marcin Kopaczka, Dorit Merhof, Marion Bankstahl, André Bleich and Christine Häger
Post-operative severity assessment in sheep
Post-operative severity assessment in sheep
2022
Stefan Bruch Lisa Ernst
A Model-Specific Simplification of the Mouse Grimace Scale Based on the Pain Response of Intraperitoneal CCl4 Injections
In: Scientific Reports
A Model-Specific Simplification of the Mouse Grimace Scale Based on the Pain Response of Intraperitoneal CCl4 Injections
In: Scientific Reports
2022
Laxmi Gupta, Barbara Mara Klinkhammer, Claudia Seikrit, Nina Fan, Nassim Bouteldja, Philipp Gräbel, Michael Gadermayr, Peter Boor and Dorit Merhof
Large-scale extraction of interpretable features provides new insights into kidney histopathology – a proof-of-concept study
In: Journal of Pathology Informatics
Large-scale extraction of interpretable features provides new insights into kidney histopathology – a proof-of-concept study
In: Journal of Pathology Informatics
2022
Eva Oswald, Daniel Bug, Anne Grote, Kanstantsin Lashuk, Nassim Bouteldja, Dorothee Lenhard, Anne Löhr, Anke Behnke, Volker Knauff, Anna Edinger, Kerstin Klingner, Gabriele Niedermann, Dorit Merhof, Friedrich Feuerhake and Julia Schueler
The immune cell infiltration pattern in non-small cell lung cancer PDX models is a model immanent feature and correlates with a distinct molecular and phenotypic make-up
In: Journal for ImmunoTherapy of Cancer
The immune cell infiltration pattern in non-small cell lung cancer PDX models is a model immanent feature and correlates with a distinct molecular and phenotypic make-up
In: Journal for ImmunoTherapy of Cancer
2022
Nassim Bouteldja, Barbara M. Klinkhammer, Tarek Schlaich, Peter Boor and Dorit Merhof
Improving Unsupervised Stain-To-Stain Translation using Self-Supervision and Meta-Learning
In: Journal of Pathology Informatics
Improving Unsupervised Stain-To-Stain Translation using Self-Supervision and Meta-Learning
In: Journal of Pathology Informatics
Michael Schleyer, Alice Weiglein, Juliane Thoener, Martin Strauch, Volker Hartenstein, Melisa Kantar Weigelt, Sarah Schuller, Timo Saumweber, Katharina Eichler, Astrid Rohwedder, Dorit Merhof, Marta Zlatic, Andreas Stefan Thum and Bertram Gerber
Identification of dopaminergic neurons that can both establish associative memory and acutely terminate its behavioral expression
In: Journal of Neuroscience 40 (31)
Identification of dopaminergic neurons that can both establish associative memory and acutely terminate its behavioral expression
In: Journal of Neuroscience 40 (31)
Lipeng Ning, Elisenda Bonet-Carne, Francesco Grussu, Farshid Sepehrband, Enrico Kaden, Jelle Veraart, Stefano B. Blumberg, Can Son Khoo, Marco Palombo, Iasonas Kokkinos, Daniel C. Alexander, Jaume Coll-Font, Benoit Scherrer, Simon K. Warfield, Suheyla Cetin Karayumak, Yogesh Rathi, Simon Koppers, Leon Weninger, Julia Ebert, Dorit Merhof and others
Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results
In: Neuroimage
Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results
In: Neuroimage
Daniel Truhn, Nicolai Brill, Benedikt Braun, Dorit Merhof, Christiane Kuhl, Matthias Knobe, Johannes Thüring and Sven Nebelung
A multi-purpose force-controlled loading device for cartilage and meniscus functionality assessment using advanced MRI techniques
In: Journal of the Mechanical Behavior of Biomedical Materials 101
A multi-purpose force-controlled loading device for cartilage and meniscus functionality assessment using advanced MRI techniques
In: Journal of the Mechanical Behavior of Biomedical Materials 101
Lisa Ernst, Marcin Kopaczka, Mareike Schulz, Steven R. Talbot, Birgitta Struve, Christine Häger, André Bleich, Mattea Durst, Paulin Jirkof, Margarete Arras, Roelof Maarten van Dijk, Nina Miljanovic, Heidrun Potschka, Dorit Merhof and René H. Tolba
Semi-automated generation of pictures for the Mouse Grimace Scale: A multi-laboratory analysis (Part 2)
In: Laboratory animals
Semi-automated generation of pictures for the Mouse Grimace Scale: A multi-laboratory analysis (Part 2)
In: Laboratory animals
Georg Wimmer, Michael Gadermayr, Gernot Wolkersdörfer, Roland Kwitt, Toru Tamaki, Jens Tischendorf, Michael Häfner, Shigeto Yoshida, Shinji Tanaka, Dorit Merhof and Andreas Uhl
Quest for the best endoscopic imaging modality for computer-assisted colonic polyp staging
In: World Journal of Gastroenterology
Quest for the best endoscopic imaging modality for computer-assisted colonic polyp staging
In: World Journal of Gastroenterology
Marcin Moch, Reinhard Windoffer, Nicole Schwarz, Raphaela Pohl, Jaroslav Lazar, Andreas Omenzetter, Uwe Schnakenberg, Fabian Herb, Kraisorn Chaisaowong, Dorit Merhof, Lena Ramms, Gloria Fabris, Bernd Hoffmann, Rudolf Merkel and Rudolf E. Leube
Effects of Plectin Depletion on Keratin Network Dynamics and Organization
In: PLOS ONE 11 (3)
Effects of Plectin Depletion on Keratin Network Dynamics and Organization
In: PLOS ONE 11 (3)
Daniela Kuhnt, Miriam H. Bauer, Jan Egger, Mirco Richter, Tina Kapur, Jens Sommer, Dorit Merhof and Christopher Nimsky
Fiber Tractography Based on Diffusion Tensor Imaging Compared with High-Angular-Resolution Diffusion Imaging with Compressed Sensing: Initial Experience
In: Neurosurgery 72 (Suppl 1)
Fiber Tractography Based on Diffusion Tensor Imaging Compared with High-Angular-Resolution Diffusion Imaging with Compressed Sensing: Initial Experience
In: Neurosurgery 72 (Suppl 1)
2012
Daniela Kuhnt, Miriam H. Bauer, Andreas Becker, Dorit Merhof, Amir Zolal, Mirco Richter, Peter Grummich, Oliver Ganslandt, Michael Buchfelder, Christopher Nimsky
Intraoperative visualization of fiber tracking based reconstruction of language pathways in glioma surgery.
In: Neurosurgery 70 (4)
Intraoperative visualization of fiber tracking based reconstruction of language pathways in glioma surgery.
In: Neurosurgery 70 (4)
2012
Hendrik Strobelt, Enrico Bertini, Joachim Braun, Oliver Deussen, Ulrich Groth, Thomas U. Mayer and Dorit Merhof
HiTSEE KNIME: a visualization tool for hit selection and analysis in high-throughput screening experiments for the KNIME platform
In: BMC Bioinformatics 13 (Suppl 8)
HiTSEE KNIME: a visualization tool for hit selection and analysis in high-throughput screening experiments for the KNIME platform
In: BMC Bioinformatics 13 (Suppl 8)
2011
Dorit Merhof, Pawel Markiewicz, Günther Platsch, Jérôme Declerck, Markus Weih, Johannes Kornhuber, Torsten Kuwert, Julian C. Matthews and Karl Herholz
Optimized data preprocessing for multivariate analysis applied to 99mTc-ECD SPECT datasets of Alzheimer’s patients and asymptomatic controls
In: Journal of Cerebral Blood Flow & Metabolism (published in partnership with Nature Publishing Group) 31 (1)
Optimized data preprocessing for multivariate analysis applied to 99mTc-ECD SPECT datasets of Alzheimer’s patients and asymptomatic controls
In: Journal of Cerebral Blood Flow & Metabolism (published in partnership with Nature Publishing Group) 31 (1)
2011
Courtney A. Bishop, Mark Jenkinson, Jesper L. R. Andersson, Jérôme Declerck and Dorit Merhof
Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data
In: NeuroImage 55 (3)
Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data
In: NeuroImage 55 (3)
2009
Dorit Merhof, Martin Meister, Ezgi Bingöl, Christopher Nimsky and Günther Greiner
Iso-Surface based Generation of Hulls Encompassing Neuronal Pathways
In: Stereotactic and Functional Neurosurgery 87 (1)
Iso-Surface based Generation of Hulls Encompassing Neuronal Pathways
In: Stereotactic and Functional Neurosurgery 87 (1)
2009
Christian Denzel, Klaus Balzer, Dorit Merhof and Werner Lang
3D Cross Sectional View to Investigate the Morphology of Internal Carotid Artery Plaques. Is 3D Ultrasound Superior to 2D Ultrasound?
In: Ultraschall Med. 30 (3)
3D Cross Sectional View to Investigate the Morphology of Internal Carotid Artery Plaques. Is 3D Ultrasound Superior to 2D Ultrasound?
In: Ultraschall Med. 30 (3)
2007
Dorit Merhof, Grzegorz Soza, Andreas Stadlbauer, Günther Greiner, Christopher Nimsky
Correction of susceptibility artifacts in diffusion tensor data using non-linear registration
In: Medical Image Analysis 11 (6)
Correction of susceptibility artifacts in diffusion tensor data using non-linear registration
In: Medical Image Analysis 11 (6)
2007
Dorit Merhof, Roberto Grosso, Udo Tremel, Günther Greiner
Anisotropic Quadrilateral Mesh Generation: An Indirect Approach
In: Advances in Engineering Software 38 (11-12)
Anisotropic Quadrilateral Mesh Generation: An Indirect Approach
In: Advances in Engineering Software 38 (11-12)
2007
Dorit Merhof, Frank Enders, Marc Stamminger, Christopher Nimsky, Peter Hastreiter
Reconstruction and visualization of neuronal pathways
In: Medical Technology in Bavaria – Profiles, Portraits, PerspectivesProfiles, Portraits, Perspectives 1
Reconstruction and visualization of neuronal pathways
In: Medical Technology in Bavaria – Profiles, Portraits, PerspectivesProfiles, Portraits, Perspectives 1
2006
Christopher Nimsky, Oliver Ganslandt, Frank Enders, Dorit Merhof, Thilo Hammen, Michael Buchfelder
Visualization strategies for major white matter tracts for intraoperative use
In: International Journal of Computer Assisted Radiology and Surgery (CARS) 1 (1)
Visualization strategies for major white matter tracts for intraoperative use
In: International Journal of Computer Assisted Radiology and Surgery (CARS) 1 (1)
2006
Christopher Nimsky, Oliver Ganslandt, Dorit Merhof, A. Gregory Sorensen, Rudolf Fahlbusch
Intraoperative visualization of the pyramidal tract by DTI-based fiber tracking
In: NeuroImage 30 (4)
Intraoperative visualization of the pyramidal tract by DTI-based fiber tracking
In: NeuroImage 30 (4)
2006
Dorit Merhof, Frank Enders, Marc Stamminger, Christopher Nimsky, Peter Hastreiter
Rekonstruktion und Visualisierung Neuronaler Bahnen
In: Medizintechnik Bayern – Profile, Porträts, Perspektiven (1) 1
Rekonstruktion und Visualisierung Neuronaler Bahnen
In: Medizintechnik Bayern – Profile, Porträts, Perspektiven (1) 1
2006
Dorit Merhof, Markus Sonntag, Frank Enders, Christopher Nimsky, Peter Hastreiter, Günther Greiner
Hybrid Visualization for White Matter Tracts using Triangle Strips and Point Sprites
In: IEEE Transactions on Visualization and Computer Graphics 12 (5)
Hybrid Visualization for White Matter Tracts using Triangle Strips and Point Sprites
In: IEEE Transactions on Visualization and Computer Graphics 12 (5)
2006
Frank Enders, Dorit Merhof, Peter Hastreiter, Marc Stamminger, Rudolf Fahlbusch, Christopher Nimsky
DTI-based Visualization Strategies for the Pyramidal Tract
In: GMS CURAC 1
DTI-based Visualization Strategies for the Pyramidal Tract
In: GMS CURAC 1
Conference Publications
2024
Sanaz Karimijafarbigloo, Reza Azad, Amirhossein Kazerouni and Dorit Merhof
Reducing Uncertainty in 3D Medical Image Segmentation under Limited Annotations through Contrastive Learning
In: Medical Imaging with Deep Learning
Reducing Uncertainty in 3D Medical Image Segmentation under Limited Annotations through Contrastive Learning
In: Medical Imaging with Deep Learning
2024
Sanaz Karimijafarbigloo, Reza Azad and Dorit Merhof
Self-Supervised Contrastive Learning for Consistent Few-Shot Image Representations
In: International Workshop on PRedictive Intelligence In MEdicine
Self-Supervised Contrastive Learning for Consistent Few-Shot Image Representations
In: International Workshop on PRedictive Intelligence In MEdicine
2024
Sanaz Karimijafarbigloo, Reza Azad, Yury Velichko, Ulas Bagci and Dorit Merhof
Leveraging unlabeled data for 3d medical image segmentation through self-supervised contrastive learning
In: 2024 IEEE International Symposium on Biomedical Imaging (ISBI)
Leveraging unlabeled data for 3d medical image segmentation through self-supervised contrastive learning
In: 2024 IEEE International Symposium on Biomedical Imaging (ISBI)
2024
Reza Azad, Moein Heidary, Kadir Ylmaz, Michael Hüttemann, Sanaz Karimijafarbigloo, Yuli Wu, Anke Schmeink and Dorit Merhof
Loss Functions in the Era of Semantic Segmentation: A Survey and Outlook
In: arXiv preprint arXiv:2312.05391
Loss Functions in the Era of Semantic Segmentation: A Survey and Outlook
In: arXiv preprint arXiv:2312.05391
2023
Sanaz Karimijafarbigloo, Reza Azad, Amirhossein Kazerouni and Dorit Merhof
MS-Former: Multi-Scale Self-Guided Transformer for Medical Image Segmentation
In: Medical Imaging with Deep Learning
MS-Former: Multi-Scale Self-Guided Transformer for Medical Image Segmentation
In: Medical Imaging with Deep Learning
2023
Sanaz Karimijafarbigloo, Reza Azad, Amirhossein Kazerouni, Saeed Ebadollahi and Dorit Merhof
MMCFormer: Missing Modality Compensation Transformer for Brain Tumor Segmentation
In: Medical Imaging with Deep Learning
MMCFormer: Missing Modality Compensation Transformer for Brain Tumor Segmentation
In: Medical Imaging with Deep Learning
2023
Julian Thull, Martina Crysandt, Barbara Klinkhammer, Peter Boor, Tim H. Brümmendorf, Volkmar Schulz, Dorit Merhof and Edgar Jost
Inter-Facility Evaluation of Machine Learning Based Deep Hematopoietic Cell Classifiers for Cytological Evaluation of Hematopoiesis
In: Blood 142 (Supplement 1)
Inter-Facility Evaluation of Machine Learning Based Deep Hematopoietic Cell Classifiers for Cytological Evaluation of Hematopoiesis
In: Blood 142 (Supplement 1)
2023
Long Chen, Yuli Wu, Johannes Stegmaier and Dorit Merhof
SortedAP: Rethinking Evaluation Metrics for Instance Segmentation
In: ICCV Workshop on BioImage Computing
SortedAP: Rethinking Evaluation Metrics for Instance Segmentation
In: ICCV Workshop on BioImage Computing
Moein Heidari, Amirhossein Kazerouni, Milad Soltany, Reza Azad, Ehsan Khodapanah Aghdam, Julien Cohen-Adad and Dorit Merhof
HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation
In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision
HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation
In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision
Philipp Gräbel, Martina Crysandt, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf and Dorit Merhof
Ordinal classification and regression techniques for distinguishing neutrophilic cell maturity stages in human bone marrow
In: International Conference on Pattern Recognition and Artificial Intelligence (ICPRAI)
Ordinal classification and regression techniques for distinguishing neutrophilic cell maturity stages in human bone marrow
In: International Conference on Pattern Recognition and Artificial Intelligence (ICPRAI)
2022
Marcin Kopaczka, Lisa Ernst, Mareike Schulz, Rene Tolba and Dorit Merhof
Computation of Traveled Distance of Pigs in an Open Field With Fully Convolutional Neural Networks
In: Bildverarbeitung fuer die Medizin (BVM)
Computation of Traveled Distance of Pigs in an Open Field With Fully Convolutional Neural Networks
In: Bildverarbeitung fuer die Medizin (BVM)
Philipp Gräbel, Ina Laube, Martina Crysandt, Reinhild Herwartz, Melanie Hoffmann, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf and Dorit Merhof
Surrounding Cell Suppression for Unsupervised Representation Learning in Hematological Cell Classification
In: IEEE International Symposium on Biomedical Imaging (ISBI)
Surrounding Cell Suppression for Unsupervised Representation Learning in Hematological Cell Classification
In: IEEE International Symposium on Biomedical Imaging (ISBI)
Justus Schock, Marcin Kopaczka, Benjamin Agthe, Jie Huang, Paul Kruse, Daniel Truhn, Stefan Conrad, Gerald Antoch, Christiane Kuhl, Sven Nebelung and Dorit Merhof
A Method for Semantic Knee Bone and Cartilage Segmentation with Deep 3D Shape Fitting Using Data From the Osteoarthritis Initiative
In: MICCAI Workshop on Shape Analysis in Medical Imaging (ShapeMI)
A Method for Semantic Knee Bone and Cartilage Segmentation with Deep 3D Shape Fitting Using Data From the Osteoarthritis Initiative
In: MICCAI Workshop on Shape Analysis in Medical Imaging (ShapeMI)
Philipp Gräbel, Gregor Nickel, Martina Crysandt, Reinhild Herwartz, Melanie Hoffmann, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf and Dorit Merhof
Systematic Analysis and Automated Search of Hyper-parameters for Cell Classifier Training
In: IEEE International Symposium on Biomedical Imaging (ISBI)
Systematic Analysis and Automated Search of Hyper-parameters for Cell Classifier Training
In: IEEE International Symposium on Biomedical Imaging (ISBI)
Long Chen, Martin Strauch, Matthias Daub, Xiaochen Jiang, Marcus Jansen, Hans-Georg Luigs, Susanne Schultz-Kuhlmann, Stefan Kruessel and Dorit Merhof
A CNN Framework Based on Line Annotations for Detecting Nematodes in Microscopic Images
In: IEEE International Symposium on Biomedical Imaging (ISBI)
A CNN Framework Based on Line Annotations for Detecting Nematodes in Microscopic Images
In: IEEE International Symposium on Biomedical Imaging (ISBI)
Christoph Haarburger, Michael Baumgartner, Daniel Truhn, Mirjam Broeckmann, Hannah Schneider, Simone Schrading, Christiane Kuhl and Dorit Merhof
Multi Scale Curriculum CNN for Context-Aware Breast MRI Malignancy Classification
In: International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
Multi Scale Curriculum CNN for Context-Aware Breast MRI Malignancy Classification
In: International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
Daniel Bug, Dennis Eschweiler, Qianyu Liu, Justus Schock, Leon Weninger, Friedrich Feuerhake, Julia Schüler, Johannes Stegmaier and Dorit Merhof
Combined Learning for Similar Tasks with Domain-Switching Networks
In: International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
Combined Learning for Similar Tasks with Domain-Switching Networks
In: International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
Marcin Kopaczka, Lisa Ernst, Justus Schock, Arne Schneuing, Alexander Guth, René H. Tolba and Dorit Merhof
Introducing CNN-Based Mouse Grim Scale Analysis for Fully Automated Image-Based Assessment of Distress in Laboratory Mice (Short Paper)
In: Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM)
Introducing CNN-Based Mouse Grim Scale Analysis for Fully Automated Image-Based Assessment of Distress in Laboratory Mice (Short Paper)
In: Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM)
Philipp Gräbel, Martina Crysandt, Reinhild Herwartz, Melanie Hoffmann, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf and Dorit Merhof
Evaluating Out-of-the-box Methods for the Classification of Hematopoietic Cells in Images of Stained Bone Marrow
In: 1st MICCAI Workshop on Computational Pathology (COMPAY)
Evaluating Out-of-the-box Methods for the Classification of Hematopoietic Cells in Images of Stained Bone Marrow
In: 1st MICCAI Workshop on Computational Pathology (COMPAY)
Michael Gadermayr, Vitus Appel, Barbara M. Klinkhammer, Peter Boor and Dorit Merhof
Which Way Round? A Study on the Performance of Stain-Translation for Segmenting Arbitrarily Dyed Histological Images
In: International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
Which Way Round? A Study on the Performance of Stain-Translation for Segmenting Arbitrarily Dyed Histological Images
In: International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
Marcin Kopaczka, Nikolai Blanik, Michael Czaplik, Nadine Hochhausen, Michael Paul, Carina Pereira, Steffen Leonhardt, Vladimir Blazek and Dorit Merhof
A Thermal Infrared Face Database and Active Appearance Model Based Face Detection in a System for Pain Assessment in Sedated Patients
In: 11th German-Russian Conference on Biomedical Enginerering (RGC)
A Thermal Infrared Face Database and Active Appearance Model Based Face Detection in a System for Pain Assessment in Sedated Patients
In: 11th German-Russian Conference on Biomedical Enginerering (RGC)
Courtney A. Bishop, Giovanna Zamboni, Jürgen Dukart, Karsten Müller, Henryk Barthel, Osama Sabri, Matthias L. Schroeter, Jérôme Declerck, Dorit Merhof and Mark Jenkinson
A Combined MR-PET Analysis of Whole field and Sub field Hippocampal Changes in AD and FTLD
In: 19th Annual Meeting of the Organization for Human Brain Mapping (HBM)
A Combined MR-PET Analysis of Whole field and Sub field Hippocampal Changes in AD and FTLD
In: 19th Annual Meeting of the Organization for Human Brain Mapping (HBM)
2012
Diana Röttger, Daniela Dudai, Dorit Merhof, Stefan Müller
ISMI: a classification index for high angular resolution diffusion imaging
In: SPIE Medical Imaging 2012 – Conference on Image Processing
ISMI: a classification index for high angular resolution diffusion imaging
In: SPIE Medical Imaging 2012 – Conference on Image Processing
2012
Elisabeth Stühler, Günther Platsch, Markus Weih, Johannes Kornhuber, Torsten Kuwert and Dorit Merhof
Classification of Neurodegenerative Dementia by Gaussian Mixture Models Applied to SPECT Images
In: IEEE Medical Imaging Conference (IEEE MIC)
Classification of Neurodegenerative Dementia by Gaussian Mixture Models Applied to SPECT Images
In: IEEE Medical Imaging Conference (IEEE MIC)
2012
Thorsten Rieß, Joseph Marino, Cornelia Wandke, Dorit Merhof, Oliver Deussen, Gábor Csúcs, Ulrike Kutay, Péter Horváth
Image Analysis of Nuclear Envelope Breakdown Events using KNIME
In: 9th International Workshop on Computational Systems Biology (WCSB)
Image Analysis of Nuclear Envelope Breakdown Events using KNIME
In: 9th International Workshop on Computational Systems Biology (WCSB)
2012
Mirco Richter, Courtney A. Bishop, Jürgen Dukart, Elisabeth Stühler, Karsten Müller, Matthias L. Schröter and Dorit Merhof
Skeleton-based gyri sulci separation for improved assessment of cortical thickness
In: IEEE 9th International Symposium on Biomedical Imaging (IEEE ISBI)
Skeleton-based gyri sulci separation for improved assessment of cortical thickness
In: IEEE 9th International Symposium on Biomedical Imaging (IEEE ISBI)
2012
Kai Bürger, Roland Fraedrich, Dorit Merhof, Rüdiger Westermann
Instant visitation maps for interactive visualization of uncertain particle trajectories (— Best Paper Award —)
In: IS&T/SPIE Electronic Imaging 2012 – Conference on Visualization and Data Analysis 2012
Instant visitation maps for interactive visualization of uncertain particle trajectories (— Best Paper Award —)
In: IS&T/SPIE Electronic Imaging 2012 – Conference on Visualization and Data Analysis 2012
2012
Diana Röttger, Daniela Dudai, Dorit Merhof and Stefan Müller
Visualization and Evaluation of Intra-Bundle Diffusion Characteristics
In: Lecture Notes in Informatics (LNI) – Proceedings, Informatik 2012
Visualization and Evaluation of Intra-Bundle Diffusion Characteristics
In: Lecture Notes in Informatics (LNI) – Proceedings, Informatik 2012
2012
Dorit Merhof, Diana Röttger and Christopher Nimsky
Diffusionsbildgebung -Trends und aktuelle Entwicklungen
In: Lecture Notes in Informatics (LNI) – Proceedings, Informatik 2012
Diffusionsbildgebung -Trends und aktuelle Entwicklungen
In: Lecture Notes in Informatics (LNI) – Proceedings, Informatik 2012
2012
Diana Röttger, Daniela Dudai, Dorit Merhof and Stefan Müller
Bundle Visualization Strategies for HARDI Characteristics
In: 8th International Symposium on Visual Computing (ISVC)
Bundle Visualization Strategies for HARDI Characteristics
In: 8th International Symposium on Visual Computing (ISVC)
2012
Martin Strauch, Marc Brög, Clemens Müthing, Paul Szyska, Oliver Deussen, C. Giovanni Galizia, Dorit Merhof
INCIDE the brain of a bee: Visualising honeybee brain activity in real time by semantic segmentation. (— Honorable Mention Award —)
In: 2nd IEEE Symposium on Biological Data Visualization (IEEE BioVis)
INCIDE the brain of a bee: Visualising honeybee brain activity in real time by semantic segmentation. (— Honorable Mention Award —)
In: 2nd IEEE Symposium on Biological Data Visualization (IEEE BioVis)
2012
Diana Röttger, Dorit Merhof and Stefan Müller
The BundleExplorer: A Focus and Context Rendering Framework for Complex Fiber Distributions
In: 3rd Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM)
The BundleExplorer: A Focus and Context Rendering Framework for Complex Fiber Distributions
In: 3rd Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM)
2012
Felix Schönenberger, Anne Krug, Marcel Leist, Elisa Ferrando-May, Dorit Merhof
An Advanced Image Processing Approach based on Parallel Growth and Overlap Handling to Quantify Neurite Growth
In: 9th International Workshop on Computational Systems Biology (WCSB)
An Advanced Image Processing Approach based on Parallel Growth and Overlap Handling to Quantify Neurite Growth
In: 9th International Workshop on Computational Systems Biology (WCSB)
2011
Elisabeth Stühler, Günther Platsch, Markus Weih, Johannes Kornhuber, Torsten Kuwert and Dorit Merhof
Multiple Discriminant Analysis of SPECT Data for Alzheimer’s Disease, Frontotemporal Dementia and Asymptomatic Controls
In: IEEE Medical Imaging Conference (IEEE MIC)
Multiple Discriminant Analysis of SPECT Data for Alzheimer’s Disease, Frontotemporal Dementia and Asymptomatic Controls
In: IEEE Medical Imaging Conference (IEEE MIC)
2011
Enrico Bertini, Hendrik Strobelt, Joachim Braun, Oliver Deussen, Ulrich Groth, Thomas U. Mayer, Dorit Merhof
HiTSEE: A Visualization Tool for Hit Selection and Analysis in High-Throughput Screening Experiments(— Honorable Mention Award —)
In: 1st IEEE Symposium on Biological Data Visualization 2011
HiTSEE: A Visualization Tool for Hit Selection and Analysis in High-Throughput Screening Experiments(— Honorable Mention Award —)
In: 1st IEEE Symposium on Biological Data Visualization 2011
2011
Thorsten Rieß, Christian Dietz, Martin Tomas, Elisa Ferrando-May, Dorit Merhof
Automated Image Processing for the Analysis of DNA Repair Dynamics
In: 3rd International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies (BIOTECHNO)
Automated Image Processing for the Analysis of DNA Repair Dynamics
In: 3rd International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies (BIOTECHNO)
2011
Thorsten Rieß, Christian Dietz, Martin Horn, Oliver Deussen, Tanja Waldmann, Marcel Leist, Dorit Merhof
Automated Quantification of Histone Relocation in Cell Nuclei
In: VipIMAGE2011 – 3rd ECCOMAS Thematic Conference on Computational Vision and Medical Image Processing
Automated Quantification of Histone Relocation in Cell Nuclei
In: VipIMAGE2011 – 3rd ECCOMAS Thematic Conference on Computational Vision and Medical Image Processing
2011
Dorit Merhof, Felix Schönenberger, Nina Stiegler, Anne Krug, Thorsten Riess, Christiaan Karreman, Marcel Leist, Elisa Ferrando-May
Automated Image Processing to Quantify Neurite Growth in LUHMES Human Neuronal Precursor Cells
In: 8th International Workshop on Computational Systems Biology (WCSB)
Automated Image Processing to Quantify Neurite Growth in LUHMES Human Neuronal Precursor Cells
In: 8th International Workshop on Computational Systems Biology (WCSB)
2011
Johannes Hamecher, Thorsten Riess, Enrico Bertini, Karol Kozak, Johanna Kastl, Thomas U. Mayer, Dorit Merhof
A Versatile Framework for the Analysis of High-Throughput Screening Data
In: 8th International Workshop on Computational Systems Biology (WCSB)
A Versatile Framework for the Analysis of High-Throughput Screening Data
In: 8th International Workshop on Computational Systems Biology (WCSB)
2011
Courtney A. Bishop, Dorit Merhof, Jérôme Declerck and Mark Jenkinson
Accounting for Changes in Data and Labeling Protocol: Improving Atlas-based Hippocampal Segmentation
In: 17th Annual Meeting of the Organization for Human Brain Mapping (HBM)
Accounting for Changes in Data and Labeling Protocol: Improving Atlas-based Hippocampal Segmentation
In: 17th Annual Meeting of the Organization for Human Brain Mapping (HBM)
2011
Philipp Landgraf, Mirco Richter, Dorit Merhof
Anisotropy of HARDI Diffusion Profiles Based on the L2-Norm.
In: Bildverarbeitung für die Medizin (BVM)
Anisotropy of HARDI Diffusion Profiles Based on the L2-Norm.
In: Bildverarbeitung für die Medizin (BVM)
2011
Dorit Merhof, Michael Buchfelder and Christopher Nimsky
Evaluation of Local Filter Approaches for Diffusion Tensor-Based Fiber Tracking
In: Bildverarbeitung für die Medizin (BVM)
Evaluation of Local Filter Approaches for Diffusion Tensor-Based Fiber Tracking
In: Bildverarbeitung für die Medizin (BVM)
2010
Dorit Merhof, Christian Mathers, Thomas Wright, Torsten Kuwert, Günther Platsch
Analysis of Asymmetries in Ictal and Inter-Ictal SPECT Images for the Localization of Epileptic Foci
In: IEEE Medical Imaging Conference (IEEE MIC)
Analysis of Asymmetries in Ictal and Inter-Ictal SPECT Images for the Localization of Epileptic Foci
In: IEEE Medical Imaging Conference (IEEE MIC)
2010
Courtney A. Bishop, Mark Jenkinson, Jérôme Declerck, Dorit Merhof
Evaluation of hippocampal segmentation methods for healthy and pathological subjects
In: 2nd Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM)
Evaluation of hippocampal segmentation methods for healthy and pathological subjects
In: 2nd Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM)
2010
Dorit Merhof, Günther Greiner, Michael Buchfelder and Christopher Nimsky
Fiber Selection from Diffusion Tensor Data based on Boolean Operators
In: Bildverarbeitung für die Medizin (BVM)
Fiber Selection from Diffusion Tensor Data based on Boolean Operators
In: Bildverarbeitung für die Medizin (BVM)
2010
Courtney A. Bishop, Dorit Merhof, David Glahn, David Kennedy, Jérôme Declerck, Mark Jenkinson
Evaluation of four hippocampal segmentation methods in healthy and pathological subjects
In: 16th Annual Meeting of the Organization for Human Brain Mapping (HBM)
Evaluation of four hippocampal segmentation methods in healthy and pathological subjects
In: 16th Annual Meeting of the Organization for Human Brain Mapping (HBM)
2009
Dorit Merhof, Pawel Markiewicz, Jérôme Declerck, Günther Platsch, Julian Matthews and Karl Herholz
Classification Accuracy and Robustness of Multivariate Analysis Applied to 99mTc-ECD SPECT Data in Alzheimer’s Disease Patients
In: IEEE Medical Imaging Conference (IEEE MIC)
Classification Accuracy and Robustness of Multivariate Analysis Applied to 99mTc-ECD SPECT Data in Alzheimer’s Disease Patients
In: IEEE Medical Imaging Conference (IEEE MIC)
2007
Dorit Merhof, Martin Meister, Ezgi Bingöl, Peter Hastreiter, Christopher Nimsky, Günther Greiner
Generation of Hulls Encompassing Neuronal Pathways Based on Tetrahedralization and 3D Alpha Shapes
In: Bildverarbeitung für die Medizin (BVM)
Generation of Hulls Encompassing Neuronal Pathways Based on Tetrahedralization and 3D Alpha Shapes
In: Bildverarbeitung für die Medizin (BVM)
2006
Dorit Merhof, Mirco Richter, Frank Enders, Peter Hastreiter, Oliver Ganslandt, Michael Buchfelder, Christopher Nimsky, Günther Greiner
Fast and Accurate Connectivity Analysis between Functional Regions based on DT-MRI
In: Medical Image Computing and Computer Assisted Intervention (MICCAI)
Fast and Accurate Connectivity Analysis between Functional Regions based on DT-MRI
In: Medical Image Computing and Computer Assisted Intervention (MICCAI)
2006
Dorit Merhof, Markus Sonntag, Frank Enders, Christopher Nimsky, Peter Hastreiter, Günther Greiner
Streamline Visualization of Diffusion Tensor Data based on Triangle Strips
In: Bildverarbeitung für die Medizin (BVM)
Streamline Visualization of Diffusion Tensor Data based on Triangle Strips
In: Bildverarbeitung für die Medizin (BVM)
2006
Dorit Merhof, Frank Enders, Peter Hastreiter, Oliver Ganslandt, Rudolf Fahlbusch, Christopher Nimsky, Marc Stamminger
Neuronal Fiber Connections based on A*-Pathfinding
In: SPIE Medical Imaging
Neuronal Fiber Connections based on A*-Pathfinding
In: SPIE Medical Imaging
2005
Christopher Nimsky, Oliver Ganslandt, Frank Enders, Dorit Merhof, Rudolf Fahlbusch
Visualization strategies for major white matter tracts identified by diffusion tensor imaging for intraoperative use
In: Computer Assisted Radiology and Surgery (CARS)
Visualization strategies for major white matter tracts identified by diffusion tensor imaging for intraoperative use
In: Computer Assisted Radiology and Surgery (CARS)
2005
Dorit Merhof, Markus Sonntag, Frank Enders, Peter Hastreiter, Rudolf Fahlbusch, Christopher Nimsky, Günther Greiner
Visualization of Diffusion Tensor Data using Evenly Spaced Streamlines
In: Proc. Vision, Modeling and Visualization (VMV)
Visualization of Diffusion Tensor Data using Evenly Spaced Streamlines
In: Proc. Vision, Modeling and Visualization (VMV)
2005
Dorit Merhof, Frank Enders, Fernando Vega Higuera, Peter Hastreiter, Christopher Nimsky, Marc Stamminger
Integrated Visualization of Diffusion Tensor Fiber Tracts and Anatomical Data
In: Simulation and Visualization (SimVis)
Integrated Visualization of Diffusion Tensor Fiber Tracts and Anatomical Data
In: Simulation and Visualization (SimVis)
2005
Dorit Merhof, Peter Hastreiter, Christopher Nimsky, Rudolf Fahlbusch, Günther Greiner
Directional Volume Growing for the Extraction of White Matter Tracts from Diffusion Tensor Data
In: SPIE Medical Imaging
Directional Volume Growing for the Extraction of White Matter Tracts from Diffusion Tensor Data
In: SPIE Medical Imaging
2005
Frank Enders, Natascha Sauber, Dorit Merhof, Peter Hastreiter, Christopher Nimsky, Marc Stamminger
Visualization of White Matter Tracts with Wrapped Streamlines
In: IEEE Visualization (VIS)
Visualization of White Matter Tracts with Wrapped Streamlines
In: IEEE Visualization (VIS)
2005
Frank Enders, Dorit Merhof, Peter Hastreiter, Marc Stamminger, Christopher Nimsky
Enhanced Visualization of Diffusion Tensor Data for Neurosurgery
In: Bildverarbeitung für die Medizin (BVM)
Enhanced Visualization of Diffusion Tensor Data for Neurosurgery
In: Bildverarbeitung für die Medizin (BVM)
2005
Peter Hastreiter, Dorit Merhof, Frank Enders, Rudolf Fahlbusch, Christopher Nimsky, Marc Stamminger
Rekonstruktion und Visualisierung neuronaler Bahnen
In: GI Jahrestagung (2)
Rekonstruktion und Visualisierung neuronaler Bahnen
In: GI Jahrestagung (2)
2004
Dorit Merhof, Peter Hastreiter, Grzegorz Soza, Marc Stamminger, Christopher Nimsky
Non-linear Integration of DTI-based Fiber Tracts into Standard 3D MR Data
In: Vision, Modeling and Visualization (VMV)
Non-linear Integration of DTI-based Fiber Tracts into Standard 3D MR Data
In: Vision, Modeling and Visualization (VMV)
2004
Dorit Merhof, Roberto Grosso, Udo Tremel
Anisotropic quadrilateral meshing – an indirect approach
In: Engineering Computational Structures (ECT)
Anisotropic quadrilateral meshing – an indirect approach
In: Engineering Computational Structures (ECT)
2004
Dorit Merhof, Frank Enders, Peter Hastreiter, Marc Stamminger, Rudolf Fahlbusch, Christopher Nimsky
Reconstruction of neural pathways based on diffusion tensor imaging
In: Deutsche Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC)
Reconstruction of neural pathways based on diffusion tensor imaging
In: Deutsche Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC)