Books and book chapters

Journal Publications

2020

T. Scherr, K. Streule, A. Bartschat, M. Böhland, K. Löffler, J. Stegmaier, M. Reischl, V. Orian-Rousseau, R. Mikut
BeadNet: Automated Bead Detection and Counting in Low-Resolution Microscopy Images
In: Bioinformatics (in press)

2020

M. Takamiya, J. Stegmaier, A. Y. Kobitski, B. Schott, B. D. Weger, D. Margariti, A. R. C. Delgado, V. Gourain, T. Scherr, L. Yang, S. Sorge, V. Hartmann, J. C. Otte, J. v. Wezel, R. Stotzka, T. Reinhard, G. Schlunk, T. Dickmeis, S. Rastegar, R. Mikut, G. U. Nienhaus and U. Strähle
Pax6 Organizes the Anterior Eye Segment Independently of Optic Cup Patterning by Guiding Two Distinct Neural Crest Waves
In: PLoS Genetics (in press)

2020

J. Gierten, C. Pylatiuk, O. T. Hammouda, C. Schock, J. Stegmaier, J. Wittbrodt, J. Gehrig and F. Loosli
Automated High-Throughput Heartbeat Quantification in Medaka and Zebrafish Embryos under Physiological Conditions
In: Scientific Reports 10 (1)

Conference Publications

2020

S. Bhide, R. Mikut, M. Leptin and J. Stegmaier
Semi-Automatic Generation of Tight Binary Masks and Non-Convex Isosurfaces for Quantitative Analysis of 3D Biological Samples
In: IEEE International Conference on Image Processing (ICIP, in press)

2020

Leon Weninger, Kerstin Juetten, Simon Köppers, Verena Mainz, Martin Wiesmann, Hans Clusmann, Dorit Merhof and Chuh-Hyoun Na
Free-water correction in Diffusion MRI improves preoperative evaluation of peritumoral white-matter tracts in glioma patients
In: 71. Jahrestagung Deutsche Gesellschaft für Neurochirurgie (DGNC)

2020

Oliver Rippel, Maximilian Schnabel, Georg-Philipp Paar, Thomas Gries and Dorit Merhof
Automated Segmentation of Profiled Fibers in cross-sectional Micrographs for Quality Control
In: 2020 IEEE International Instrumentation and Measurement Technology Conference (I2MTC)

2020

Marcin Kopaczka, Richard Lindenputz, Daniel Truhn, Maximilian Schulze-Hagen and Dorit Merhof
Fully Automated Segmentation of the Psoas Major Muscle in Clinical CT Scans
In: Bildverarbeitung fuer die Medizin (BVM)

2020

Marcin Kopaczka, Tobias Jacob, Lisa Ernst, Mareike Schulz, Rene Tolba and Dorit Merhof
Robust Open Field Rodent Tracking using a Fully Convolutional Network and a Softargmax Distance Loss
In: Bildverarbeitung fuer die Medizin (BVM)

 
2020

Tarek Stiebel and Dorit Merhof
Deep Optimal Filter Responses for Multi-Spectral Imaging
In: London Image Meeting (LIM)

2020

Philipp Gräbel, Özcan Özkan, Martina Crysandt, Reinhild Herwartz, Melanie Hoffmann, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf, Dorit Merhof
Circular Anchors for the Detection of Hematopoietic Cells using RetinaNet
In: IEEE International Symposium on Biomedical Imaging (ISBI)

2020

Christoph Haarburger, Justus Schock, Daniel Truhn, Philippe Weitz, Gustav Mueller-Franzes, Leon Weninger and Dorit Merhof
Radiomic Feature Stability Analysis based on Probabilistic Segmentations
In: IEEE International Symposium on Biomedical Imaging (ISBI)

2020

Long Chen, Martin Strauch, Matthias Daub, Xiaochen Jiang, Marcus Jansen, Hans-Georg Luigs, Susanne Schultz-Kuhlmann, Stefan Kruessel and Dorit Merhof
A CNN Framework Based on Line Annotations for Detecting Nematodes in Microscopic Images
In: IEEE International Symposium on Biomedical Imaging (ISBI)

2020

Daniel Bug, Felix Bartsch, Nadine Sarah Schaadt, Mathias Wien, Friedrich Feuerhake, Julia Schüler, Eva Oswald and Dorit Merhof
Scalable HEVC for Histological Whole-Slide Image Compression
In: Bildverarbeitung für die Medizin (BVM)

2020

Daniel Bug, Gregor Nickel, Anne Grote, Friedrich Feuerhake, Eva Oswald, Julia Schüler and Dorit Merhof
Image Quilting for Histological Image Synthesis
In: Bildverarbeitung für die Medizin (BVM)

 
2020

Tarek Stiebel, Philip Seltsam and Dorit Merhof
Enhancing Deep Spectral Super-Resolution from RGB Images by enforcing the Metameric Constraint
In: 15th Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISAPP)