D. Eschweiler, I. Laube and J. Stegmaier
Spatiotemporal Image Generation for Embryomics Applications
In: Biomedical Image Synthesis and Simulation: Methods and Applications

Dennis Pantke, Florian Mueller, Sebastian Reinartz, Jonas Philipps, Seyed Mohammadali Dadfar, Maximilian Peters, Jochen Franke, Franziska Schrank, Fabian Kiessling and Volkmar Schulz
Frequency-selective signal enhancement by a passive dual coil resonator for magnetic particle imaging
In: Physics in Medicine & Biology 67 (11)

Reza Azad, Ehsan Khodapanah Aghdam, Amelie Rauland, Yiwei Jia, Atlas Haddadi Avval, Afshin Bozorgpour, Sanaz Karimijafarbigloo, Joseph Paul Cohen, Ehsan Adeli and Dorit Merhof
Medical image segmentation review: The success of u-net
In: arXiv preprint arXiv:2211.14830

Stephan Naunheim, Yannick Kuhl, Torsten Solf, David Schug, Volkmar Schulz and Florian Mueller
Analysis of a convex time skew calibration for light sharing-based PET detectors
In: Physics in Medicine & Biology

Reza Azad, Mohammad T Al-Antary, Moein Heidari and Dorit Merhof
Transnorm: Transformer provides a strong spatial normalization mechanism for a deep segmentation model
In: IEEE Access 10

Ehsan Khodapanah Aghdam, Reza Azad, Maral Zarvani and Dorit Merhof
Attention Swin U-Net: Cross-Contextual Attention Mechanism for Skin Lesion Segmentation
In: ISBI 2023

Leon Weninger, Pragya Srivastava, Dale Zhou, Jason Z. Kim, Eli J. Cornblath, Maxwell A. Bertolero, Ute Habel, Dorit Merhof and Dani S. Bassett
Information content of brain states is explained by structural constraints on state energetics
In: Phys. Rev. E 106

A. Bhattacharyya D. Moreno-Andrés
LiveCellMiner: A New Tool to Analyze Mitotic Progression
In: PLOS ONE (in press)

Oliver Rippel, Corinna Zwinge and Dorit Merhof
Increasing the Generalization of Supervised Fabric Anomaly Detection Methods to Unseen Fabrics
In: Sensors 22 (13)

Marissa Dipiero Heather L Green and others
Peak alpha frequency and thalamic structure in children with typical development and autism spectrum disorder
In: Journal of Autism and Developmental Disorders 52 (1)

Stefan Bruch Lisa Ernst
A Model-Specific Simplification of the Mouse Grimace Scale Based on the Pain Response of Intraperitoneal CCl4 Injections
In: Scientific Reports

Laxmi Gupta, Barbara Mara Klinkhammer, Claudia Seikrit, Nina Fan, Nassim Bouteldja, Philipp Gräbel, Michael Gadermayr, Peter Boor and Dorit Merhof
Large-scale extraction of interpretable features provides new insights into kidney histopathology – a proof-of-concept study
In: Journal of Pathology Informatics

S. Strauss, A. Runions, B. Lane, D. Eschweiler, N. Bajpai, N. Trozzi, A.-L. Routier-Kierzkowska, S. Yoshida, S. R. da Silveira, A. Vijayan and M. Majda R. Tofanelli
Using Positional Information to Provide Context for Biological Image Analysis with MorphoGraphX 2.0
In: eLife 11

Eva Oswald, Daniel Bug, Anne Grote, Kanstantsin Lashuk, Nassim Bouteldja, Dorothee Lenhard, Anne Löhr, Anke Behnke, Volker Knauff, Anna Edinger, Kerstin Klingner, Gabriele Niedermann, Dorit Merhof, Friedrich Feuerhake and Julia Schueler
The immune cell infiltration pattern in non-small cell lung cancer PDX models is a model immanent feature and correlates with a distinct molecular and phenotypic make-up
In: Journal for ImmunoTherapy of Cancer

Nassim Bouteldja, Barbara M. Klinkhammer, Tarek Schlaich, Peter Boor and Dorit Merhof
Improving Unsupervised Stain-To-Stain Translation using Self-Supervision and Meta-Learning
In: Journal of Pathology Informatics

Zhilei Zhao, Jessica L. Zung, Annika Hinze, Alexis L. Kriete, Azwad Iqbal, Meg A. Younger, Benjamin J. Matthews, Dorit Merhof, Stephan Thiberge, Rickard Ignell, Martin Strauch and Carolyn S. McBride
Mosquito brains encode unique features of human odour to drive host seeking
In: Nature

R. Windoffer, N. Schwarz, S. Yoon, T. Piskova, M. Scholkemper, J. Stegmaier, A. Bönsch, J. Di Russo and R. Leube
Quantitative Mapping of Keratin Networks in 3D
In: eLife 11

A. Dievernich U. Klinge and J. Stegmaier
Quantitative Characterization of Macrophage, Lymphocyte and Neutrophil Subtypes within the Foreign Body Granuloma of Human Mesh Explants by 5 Marker Multiplex Fluorescence Microscopy
In: Frontiers in Medicine

Long Chen, Matthias Daub, Hans-Georg Luigs, Marcus Jansen, Martin Strauch and Dorit Merhof
High-throughput Phenotyping of Nematode Cysts
In: Frontiers in Plant Science

Stephan Naunheim, Yannick Kuhl, Bjoern Weissler, David Schug, Harald Radermacher, Florian Mueller, Vanessa Nadig, Laiyin Yin, Karl Krueger, Max Peters, Pierre Gebhardt, Nicolas Groß-Weege, Teresa Nolte, Eike Gegenmantel, Martino Borgo, J van der Berghe, D Gareis, T Celik, Sebastian Aussenhofer, Andre Salomon, Dennis R Schaart, René Bakker, Langen K J, Christiane Kuhl and Volkmar Schulz
The HYPMED PET/MRI Insert for Enhanced Diagnosis of Breast Cancer
In: PSMR 2022 Elba

Stephan Naunheim, Yannick Kuhl, Bjoern Weissler, David Schug, Harald Radermacher, Florian Mueller, Vanessa Nadig, Laiyin Yin, Karl Krueger, Max Peters, Pierre Gebhardt, Nicolas Groß-Weege, Teresa Nolte, Eike Gegenmantel, Martino Borgo, J van der Berghe, D Gareis, T Celik, Sebastian Aussenhofer, Andre Salomon, Dennis R Schaart, René Bakker, Langen K J, Christiane Kuhl and Volkmar Schulz
Enhanced Diagnosis of Breast Cancer With The HYPMED PET/MRI Insert
In: IEEE NSS MIC 2022

Franziska Schrank, Dennis Pantke and Volkmar Schulz
Deep learning MPI super-resolution by implicit representation of the system matrix
In: IJMPI 8 (1 Suppl 1)

Abin Jose, Qi Mei, Dennis Eschweiler, Ina Laube and Johannes Stegmaier
Linear Discriminant Analysis Metric Learning Using Siamese Neural Networks
In: International Conference on Image Processing (ICIP)

Moein Heidari, Amirhossein Kazerouni, Milad Soltany, Reza Azad, Ehsan Khodapanah Aghdam, Julien Cohen-Adad and Dorit Merhof
HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation
In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision

Long Chen, Yuli Wu and Dorit Merhof
Instance Segmentation of Dense and Overlapping Objects via Layering
In: The British Machine Vision Conference (BMVC)

Dennis Eschweiler, Justus Schock and Johannes Stegmaier
Probabilistic Image Diversification to Improve Segmentation in 3D Microscopy Image Data
In: MICCAI International Workshop on Simulation and Synthesis in Medical Imaging (SASHIMI)

Leon Weninger, Sandro Romanzetti, Julia Ebert, Kathrin Reetz and Dorit Merhof
Harmonization of diffusion MRI data obtained with multiple head coils using hybrid CNNs
In: ECCV AIMIA Workshop

Reza Azad, Moein Heidari, Moein Shariatnia, Ehsan Khodapanah Aghdam, Sanaz Karimijafarbigloo, Ehsan Adeli and Dorit Merhof
TransDeepLab: Convolution-Free Transformer-based DeepLab v3+ for Medical Image Segmentation
In: MICCAI Workshop on PRedictive Intelligence in Medicine (PRIME 2022)

Reza Azad, Moein Heidari, Julien Cohen-Adad, Ehsan Adeli and Dorit Merhof
Intervertebral Disc Labeling With Learning Shape Information, A Look Once Approach
In: MICCAI Workshop on PRedictive Intelligence in Medicine (PRIME 2022)

Reza Azad, Moein Heidari, Yuli Wu and Dorit Merhof
Contextual Attention Network: Transformer Meets U-Net
In: MICCAI Workshop on Machine Learning in Medical Imaging (MLMI 2022)

Mathias Wien, Joel Jung and Vittorio Baroncini
Formal Visual Evaluation and Study of Objective Metrics for MPEG Dynamic Mesh Coding
In: European Workshop on Visual Information Processing (EUVIP) 2022 (Accepted)

Reza Azad, Nika Khosravi and Dorit Merhof
SMU-Net: Style matching U-Net for brain tumor segmentation with missing modalities
In: 5th International Conference on Medical Imaging with Deep Learning (MIDL)

Julian Thull Philipp Gräbel
Automatic Embedding Interventions for the Classification of Hematopoietic Cells
In: 26th International Conference on Pattern Recognition (ICPR)

Long Chen, Martin Strauch, Matthias Daub, Hans-Georg Luigs, Marcus Jansen and Dorit Merhof$
Learning to Segment Fine Structures Under Image-Level Supervision With an Application to Nematode Segmentation
In: International Engineering in Medicine and Biology Conference (EMBC)

Philipp Gräbel, Martina Crysandt, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf and Dorit Merhof
Ordinal classification and regression techniques for distinguishing neutrophilic cell maturity stages in human bone marrow
In: International Conference on Pattern Recognition and Artificial Intelligence (ICPRAI)

Philipp Gräbel, Julian Thull, Martina Crysandt, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf and Dorit Merhof
Spatial Maturity Regression for the Classification of Hematopoietic Cells
In: IEEE International Conference on Image Processing Theory and Tools and Applications (IPTA)

Philipp Gräbel, Julian Thull, Martina Crysandt, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf and Dorit Merhof
Analysis of automatically generated embedding guides for cell classification
In: IEEE International Conference on Image Processing Theory and Tools and Applications (IPTA)

Justus Schock, Yu-Chia Lan, Daniel Truhn, Marcin Kopaczka, Stefan Conrad, Sven Nebelung and Dorit Merhof
Monoplanar CT Reconstruction with GANs
In: IEEE International Conference on Image Processing Theory and Tools and Applications (IPTA)

Marcin Kopaczka, Lisa Ernst, Mareike Schulz, Rene Tolba and Dorit Merhof
Computation of Traveled Distance of Pigs in an Open Field With Fully Convolutional Neural Networks
In: Bildverarbeitung fuer die Medizin (BVM)

Leon Weninger, Mushawar Ahmad and Dorit Merhof
From supervised to unsupervised harmonization of diffusion MRI acquisitions
In: IEEE International Symposium on Biomedical Imaging (ISBI)

Yuli Wu, Peter Walter and Dorit Merhof
Multiscale Softmax Cross Entropy for Fovea Localization on Color Fundus Photography
In: Bildverarbeitung fuer die Medizin (BVM)

Oliver Rippel, Nikolaj Schönfelder, Khosrow Rahimi, Juliana Kurniadi, Andreas Herrmann and Dorit Merhof
Panoptic Segmentation of Animal Fibers
In: 2022 IEEE International Instrumentation and Measurement Technology Conference (I2MTC)

Oliver Rippel, Arnav Chavan, Chucai Lei and Dorit Merhof
Transfer Learning Gaussian Anomaly Detection by Fine-tuning Representations
In: Proceedings of the 2nd International Conference on Image Processing and Vision Engineering - IMPROVE

Leon Weninger, Jarek Ecke, Chuh-Hyoun Na Na, Kerstin Jütten and Dorit Merhof
Diffusion MRI Specific Pretraining by Self-Supervision on an Auxiliary Dataset
In: Bildverarbeitung fuer die Medizin (BVM)

Sergen Gülçelik Oliver Rippel and Dorit Merhof
Animal Fiber Identification under the Open Set Condition
In: 17th Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISAPP)

Dennis Eschweiler, Richard S. Smith and Johannes Stegmaier
Robust 3D Cell Segmentation: Extending the View of Cellpose
In: IEEE International Conference in Image Processing (ICIP)