Books and book chapters


2021

Kopaczka, Marcin Tadeusz
Facial analysis for affective computing in humans and rodents


 

Journal publications

2021

Justus Schock, Daniel Truhn, Darius Nürnberger, Stefan Conrad, Marc S. Huppertz, Sebastian Keil, Christiane Kuhl, Dorit Merhof, Sven Nebelung
Artificial intelligence-based automatic assessment of lower limb torsion on MRI
In: Scientific Reports 11 (1)

2021

Y.-F. Zhang, L. V. Cifuentes, K. N. Wright, J. P. Bhattarai, J. Mohrhardt, D. Fleck, E. Janke, C. Jiang, S. L. Cranfill, N. Goldstein, M. Schreck, A. H. Moberly, Y. Yu, B. R. Arenkiel, J. N. Betley, W. Luo, J. Stegmaier, D. W. Wesson, M. Spehr, M. V. Fuccillo, M. Ma
Ventral Striatal Islands of Calleja Neurons Control Grooming in Mice
In: Nature Neuroscience

2021

Dennis Eschweiler, Malte Rethwisch, Mareike Jarchow, Simon Koppers and Johannes Stegmaier
3D fluorescence microscopy data synthesis for segmentation and benchmarking
In: PLOS ONE 16 (12)

2021

Christian Timmerer, Mathias Wien, Lu Yu and Amy Reibman
Special issue on Open Media Compression: Overview, Design Criteria, and Outlook on Emerging Standards
In: Proceedings of the IEEE 109 (9)

2021

Philipp Gräbel, Özcan Özkan, Martina Crysandt, Reinhild Herwartz, Melanie Bauman, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf, Dorit Merhof
State of the Art Cell Detection in Bone Marrow Slide Images
In: Journal of Pathology Informatics 12 (1)

2021

S. Rubin, A. Agrawal, J. Stegmaier, S. Krief, N. Felsenthal, J. Svorai, Y. Addadi, P. Villoutreix, T. Stern, E. Zelzer
Application of 3D MAPs Pipeline Identifies the Morphological Sequence Chondrocytes Undergo and the Regulatory Role of GDF5 in this Process
In: Nature Communications 12 (1)

2021

S. Bhide, D. Gombalova, G. Mönke, J. Stegmaier, V. Zinchenko, A. Kreshuk, J. M. Belmonte, M. Leptin
Mechanical Competition Alters the Cellular Interpretation of an Endogenous Genetic Program
In: Journal of Cell Biology 220 (11)

2021

Kerstin Jütten, Leon Weninger, Verena Mainz, Siegfried Gauggel, Ferdinand Binkofski, Martin Wiesmann, Dorit Merhof, Hans Clusmann, Chuh-Hyoun Na
Dissociation of structural and functional connectomic coherence in glioma patients
In: Scientific Reports 11 (16790)

2021

Oliver Rippel, Patrick Mertens, Eike König and Dorit Merhof
Gaussian Anomaly Detection by Modeling the Distribution of Normal Data in Pre-Trained Deep Features
In: IEEE Transactions on Instrumentation and Measurement

2021

Dimitrios Kapsokalyvas, Rodrigo Rosas, Rob Janssen, Jo Vanoevelen, Miranda Nabben, Martin Strauch, Dorit Merhof, Marc van Zandvoort
Multiview deconvolution approximation multiphoton microscopy of tissues and zebrafish larvae.
In: Scientific Reports 11 (10160)

2021

Michael Gadermayr, Lotte Heckmann, Kexin Li, Friederike Bähr, Madlaine Müller, Daniel Truhn, Dorit Merhof and Burkhard Gess
Image-to-Image Translation for Simplified MRI Muscle Segmentation
In: Frontiers in Radiology

2021

David Fleck, Lina Kenzler, Nadine Mundt, Martin Strauch, Naofumi Uesaka, Robert Moosmann, Felicitas Bruentgens, Annika Missel, Artur Mayerhofer, Dorit Merhof, Jennifer Spehr and Marc Spehr
ATP activation of peritubular cells drives testicular sperm transport
In: eLife 10:e62885

2021

Nassim Bouteldja, Barbara M. Klinkhammer, Roman D. Bülow, Patrick Droste, Simon W. Otten, Saskia Freifrau von Stillfried, Julia Moellmann, Susan M. Sheehan, Ron Korstanje, Sylvia Menzel, Peter Bankhead, Matthias Mietsch, Charis Drummer, Michael Lehrke, Rafael Kramann, Jürgen Floege, Peter Boor and Dorit Merhof
Deep Learning-Based Segmentation and Quantification in Experimental Kidney Histopathology
In: Journal of the American Society of Nephrology


 

Conference publications

2021

Jens Schneider, Johannes Sauer and Mathias Wien
RDPlot -- An Evaluation Tool for Video Coding Simulations
In: Visual Communications and Image Processing (VCIP)

2021

Reza Azad, Afshin Bozorgpour, Maryam Asadi-Aghbolaghi, Dorit Merhof and Sergio Escalera
Deep Frequency Re-Calibration U-Net for Medical Image Segmentation
In: ICCV Workshop on Computer Vision for Automated Medical Diagnosis (CVAMD)

2021

C. Yang, D. Eschweiler, J. Stegmaier
Semi-and Self-Supervised Multi-View Fusion of 3D Microscopy Images using Generative Adversarial Networks
In: MICCAI Workshop on Machine Learning for Medical Image Reconstruction (MLMIR)

2021

Philipp Gräbel, Martina Crysandt, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf, Dorit Merhof
Guided Representation Learning for the Classification of Hematopoietic Cells
In: ICCV Workshop on Computational Challenges in Digital Pathology (CDPath)

2021

Nicolas Horst, Priyanka Das and Mathias Wien
Adaptive Boundary Extension for Inter Prediction
In: Picture Coding Symposium (PCS)

2021

Philipp Adis, Nicolas Horst and Mathias Wien
D3DLO: Deep 3D LiDAR Odometry
In: IEEE International Conference on Image Processing (ICIP)

2021

Leon Weninger, Andre Gilerson and Dorit Merhof
Improving Localization of Brain Tumors through 3D GAN Inpainting
In: International Engineering in Medicine and Biology Conference (EMBC)

2021

Oliver Rippel and Dorit Merhof
Leveraging pre-trained Segmentation Networks for Anomaly Segmentation
In: IEEE 26th International Conference on Emerging Technologies and Factory Automation (ETFA)

2021

Oliver Rippel, Peter Haumering, Johannes Brauers and Dorit Merhof
Anomaly Detection for the Automated Visual Inspection of PET Preform Closures
In: IEEE 26th International Conference on Emerging Technologies and Factory Automation (ETFA)

2021

Philipp Gräbel, Ina Laube, Martina Crysandt, Reinhild Herwartz, Melanie Hoffmann, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf, Dorit Merhof
Surrounding Cell Suppression for Unsupervised Representation Learning in Hematological Cell Classification
In: IEEE International Symposium on Biomedical Imaging (ISBI)

2021

D. Eschweiler, M. Rethwisch, S. Koppers, and J. Stegmaier
Spherical Harmonics for Shape-Constrained 3D Cell Segmentation
In: IEEE International Symposium on Biomedical Imaging (ISBI)

2021

D. Bähr, D. Eschweiler, A. Bhattacharyya, D. Moreno-Andrés, W. Antonin and J. Stegmaier
CellCycleGAN: Spatiotemporal Microscopy Image Synthesis of Cell Populations using Statistical Shape Models and Conditional GANs
In: IEEE International Symposium on Biomedical Imaging (ISBI)

2021

Oliver Rippel, Niclas Bilitewski, Khosrow Rahimi, Juliana Kurniadi, Andreas Herrmann and Dorit Merhof
Identifying Pristine and Processed Animal Fibers using Machine Learning
In: IEEE International Instrumentation and Measurement Technology Conference (I2MTC)

2021

Michael Gadermayr, Maximilian Tschuchnig, Laxmi Gupta, Nils Krämer, Daniel Truhn, Dorit Merhof and Burkhard Gess
An asymmetric cycle-consistency loss for dealing with many-to-one mappings in image translation: a study on thigh MR scans
In: IEEE International Symposium on Biomedical Imaging (ISBI)

2021

Philipp Gräbel, Martina Crysandt, Reinhild Herwartz, Melanie Hoffmann, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf, Dorit Merhof
Reduction of stain variability in bone marrow microscopy images
In: Bildverarbeitung fuer die Medizin (BVM)

2021

Philipp Gräbel, Ina Laube, Martina Crysandt, Reinhild Herwartz, Melanie Hoffmann, Barbara M. Klinkhammer, Peter Boor, Tim H. Brümmendorf, Dorit Merhof
Rotation invariance for unsupervised cell representation learning
In: Bildverarbeitung fuer die Medizin (BVM)

2021

Leon Weninger, Maxim Drobjazko, Na, Chuh-Hyoun Na, Kerstin Jütten and Dorit Merhof
Autoencoder-based quality assessment for synthetic diffusion-MRI data
In: Bildverarbeitung fuer die Medizin (BVM)

2021

Oliver Rippel, Maximilian Müller, Andreas Münkel, Thomas Gries and Dorit Merhof
Estimating the Probability Density Function of new Fabrics for Fabric Anomaly Detection
In: 10th International Conference on Pattern Recognition Applications and Methods (ICPRAM)

2021

Oliver Rippel, Patrick Mertens and Dorit Merhof
Modeling the Distribution of Normal Data in Pre-Trained Deep Features for Anomaly Detection
In: 25th International Conference on Pattern Recognition (ICPR)